Package index • encodeUtils

Package overview

encodeUtils encodeUtils-package: encodeUtils: Work with ENCODE metadata and files from R

Search and inspect ENCODE records

encode_search(): Search ENCODE metadata
encode_results(): Extract the main table from an ENCODE result
encode_list_files(): List files for ENCODE experiments

Select, download, and read files

encode_file_presets(): List or inspect ENCODE file-selection presets
encode_select_files(): Select ENCODE files to use or download
encode_download(): Download ENCODE files
encode_read(): Read a local ENCODE file

Reproducibility

encode_manifest(): Build an ENCODE reproducibility manifest